Difference between revisions of "Python for Data Science"

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(Online Jupyter)
(Customize Jupyter)
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: https://nbviewer.jupyter.org/
 
: https://nbviewer.jupyter.org/
 
: Example: https://nbviewer.jupyter.org/github/bokeh/bokeh-notebooks/blob/main/tutorial/06%20-%20Linking%20and%20Interactions.ipynb
 
: Example: https://nbviewer.jupyter.org/github/bokeh/bokeh-notebooks/blob/main/tutorial/06%20-%20Linking%20and%20Interactions.ipynb
 
 
<br />
 
 
===Customize Jupyter===
 
 
 
<br />
 
====Themes====
 
https://github.com/dunovank/jupyter-themes
 
 
Ver el tema que muestran en esta página: https://gist.github.com/pierrejoubert73/902cc94d79424356a8d20be2b382e1ab
 
 
 
jt  -t oceans16    -cellw 98%  -lineh 120  -fs 14  -nfs 14  -dfs 14  -ofs 14
 
 
 
https://www.kaggle.com/getting-started/97540
 
jt  -t monokai      -cellw 98%  -lineh 120  -fs 14  -nfs 14  -dfs 14  -ofs 14  -f fira  -nf ptsans  -N  -kl  -cursw 2  -cursc r  -T
 
 
 
<br />
 
 
====Extensions====
 
This post mention so nice extension and configuration that can be done: https://towardsdatascience.com/bringing-the-best-out-of-jupyter-notebooks-for-data-science-f0871519ca29
 
 
<br />
 
=====Unofficial Jupyter Notebook Extensions=====
 
https://jupyter-contrib-nbextensions.readthedocs.io/en/latest/index.html
 
 
<span style="color: green">'''This is very important. There are very nice extensions in this package:'''</span>
 
 
* toc2: https://jupyter-contrib-nbextensions.readthedocs.io/en/latest/nbextensions/toc2/README.html
 
* Collapsible Headings
 
* ... etc
 
 
<br />
 
======Installation======
 
https://jupyter-contrib-nbextensions.readthedocs.io/en/latest/install.html
 
 
<span style="color: red">'''I had some issues to install it. La format indicada por defecto:'''</span>
 
 
pip install jupyter_contrib_nbextensions
 
jupyter contrib nbextension install --user
 
 
<span style="color: red">'''A través de la forma anterior no pude instalar el paquete de forma correcta. La instalación no retornó errorres, y la extensión se mostraba en Jupyter-notebook pero no podía activar "enable" las extensiones.'''</span>
 
 
 
<span style="color: red">'''Al parecer es un problema con la ubicación de la instalación. Yo estaba usando conda pero conda está presentando problemas. La instalación de los paquestes demora muchísimo y luego el paquete parece no estar disponible.'''</span>
 
 
 
<span style="color: red">'''En el siguiente post encontré una solución para instalar nbextension usando pip:'''</span>
 
https://github.com/ipython-contrib/jupyter_contrib_nbextensions/issues/1127
 
 
pip install --upgrade jupyter_contrib_nbextensions
 
jupyter contrib nbextension install  --sys-prefix  --symlink
 
 
<span style="color: red">'''«--symlink» creo que lo usé pero no estoy completamente seguro. También realicé el --upgrade pero creo que la diferencia la hicieron las opciones --sys-prefix  --symlink'''</span>
 
 
 
 
Si no se muestra la '''Nbextensions''' tab (), try to reinstall the https://github.com/Jupyter-contrib/jupyter_nbextensions_configurator
 
 
pip install jupyter_nbextensions_configurator
 
or
 
conda install -c conda-forge jupyter_nbextensions_configurator
 
 
 
<br />
 
 
====CustomJS and CustonCSS files====
 
This is a good post: https://forums.fast.ai/t/jupyter-notebook-enhancements-tips-and-tricks/17064
 
 
Keyboard Shortcut Customization: https://jupyter-notebook.readthedocs.io/en/stable/examples/Notebook/Custom%20Keyboard%20Shortcuts.html
 
 
 
<br />
 
custom.js
 
<syntaxhighlight lang="js">
 
/** Mis configuraciones */
 
 
// This is to enable syntax highlighting for SQL code:
 
// https://stackoverflow.com/questions/43641362/adding-syntax-highlighting-to-jupyter-notebook-cell-magic
 
require(['notebook/js/codecell'], function(codecell) {
 
  codecell.CodeCell.options_default.highlight_modes['magic_text/x-mssql'] = {'reg':[/^%%sql/]} ;
 
  Jupyter.notebook.events.one('kernel_ready.Kernel', function(){
 
  Jupyter.notebook.get_cells().map(function(cell){
 
      if (cell.cell_type == 'code'){ cell.auto_highlight(); } }) ;
 
  });
 
});
 
 
 
// My plain theme
 
// This is a good post where I took some ideas to write the following fuction: https://forums.fast.ai/t/jupyter-notebook-enhancements-tips-and-tricks/17064
 
function plainTheme() {
 
    var input_promp_fields = document.getElementsByClassName("prompt_container");
 
    var text_render_fields = document.getElementsByClassName("text_cell_render");
 
 
    if (input_promp_fields[0].style.visibility == "collapse"){
 
        action = "visible";
 
        input_marginLeft = "0px";
 
        border_top  = "3px";
 
        prompt_width = "74px";
 
        padding_top = "0px";
 
        output_margin = "40px";
 
    }else{
 
        action = "collapse";
 
        input_marginLeft = "74px";
 
        border_top  = '0px';
 
        prompt_width = "74px";
 
        padding_top = "40px";
 
        output_margin = "40px";
 
    }
 
 
    // Si queremos usar !important debemos hacerlo de esta forma utilizando JQuery:
 
    // https://makitweb.com/how-to-add-important-to-css-property-with-jquery/
 
    var text_cell_fields = document.getElementsByClassName("text_cell");
 
    $(text_cell_fields).ready(function(){
 
        $('.input_prompt').css({
 
            'cssText': `width: 40px !important; max-width: ${prompt_width} !important; min-width: ${prompt_width} !important;`
 
        });
 
    });
 
 
    $(document).ready(function(){
 
        $(".prompt_container").css(
 
            'visibility', `${action}`
 
        );
 
       
 
        $(".input").css(
 
            'padding-left', `${input_marginLeft}`
 
        );
 
       
 
        $(".output_subarea").css(
 
            'margin-left', `${output_margin}`
 
        );
 
                   
 
        $('.cell').css({
 
            'cssText': `border-top-width: ${border_top} !important; border-bottom-width: ${border_top} !important;`
 
        });
 
       
 
        $(".collapsible_headings_ellipsis").css({
 
            'cssText': `padding-top:${padding_top} !important; border-top-width: ${border_top} !important; border-bottom-width: ${border_top} !important;`
 
        });
 
 
        $(".text_cell_render").css({
 
            'cssText': `margin-left: -10px;`
 
        });
 
    });           
 
}
 
 
Jupyter.keyboard_manager.command_shortcuts.add_shortcut('Alt-Ctrl-Q', {
 
    help : '...',
 
    help_index : 'zz',
 
    handler : function (event) {
 
        plainTheme();
 
    return false;
 
    }}
 
);
 
 
Jupyter.keyboard_manager.edit_shortcuts.add_shortcut('Alt-Ctrl-Q', {
 
    help : '...',
 
    help_index : 'zz',
 
    handler : function (event) {
 
        plainTheme();
 
    return false;
 
    }}
 
);
 
 
 
// This could be very usefull. It allows to add text automatically into a cell
 
// https://forums.fast.ai/t/jupyter-notebook-enhancements-tips-and-tricks/17064/27
 
Jupyter.keyboard_manager.edit_shortcuts.add_shortcut('Ctrl-Shift-J', {
 
    help : '...',
 
    help_index : 'zz',
 
    handler : function (event) {
 
        document.body.style.background = 'blue'
 
        var target = Jupyter.notebook.get_selected_cell()
 
        var cursor = target.code_mirror.getCursor()
 
        var before = target.get_pre_cursor()
 
        var after = target.get_post_cursor()
 
        target.set_text(before + 'from IPython.core.display import display, HTML; \n\taverrrdisplay(HTML("<style>.container { width:98% !important;}</style>"))' + after)
 
        cursor.ch += 20 // where to put your cursor
 
        target.code_mirror.setCursor(cursor)
 
        return false;
 
    }}
 
);
 
 
 
// To get the real value of a css field: https://stackoverflow.com/questions/26074476/document-body-style-backgroundcolor-doesnt-work-with-external-css-style-sheet
 
// window.getComputedStyle(document.body).backgroundColor
 
// window.getComputedStyle(document.getElementsByClassName("input_area")[0]).backgroundColor
 
</syntaxhighlight>
 
 
 
<br />
 
custom.css
 
<syntaxhighlight lang="css">
 
/*  Mis configuraciones  */
 
 
.container { width:98% !important; }
 
/* document.getElementById("notebook-container").style.minWidth = "50%"; */
 
/* document.getElementById("notebook-container").style.maxWidth = "50%"; */
 
 
#notebook-container {
 
width:98% !important;
 
}
 
 
.CodeMirror-gutters {
 
background-color: transparent !important;
 
background: transparent !important;
 
}
 
 
.CodeMirror-linenumber {
 
margin-left: -20px !important;
 
}
 
 
.output_subarea {
 
margin-left: 40px !important;
 
}
 
 
#toc .fa-fw {
 
color: blue !important;
 
}
 
 
#toc .highlight_on_scroll {
 
margin-left: -4px !important;
 
 
}
 
 
#toc {
 
padding-left: 10px !important;
 
}
 
 
/*  I have also changed the color
 
/*  #a6e22e  by  #388bfd
 
*  in the entire custom.css
 
*/
 
 
/* I have also chenged some of the properties of the toc directly above in the code:
 
 
#toc-wrapper {
 
z-index: 90;
 
position: fixed !important;
 
display: flex;
 
flex-direction: column;
 
overflow: hidden;
 
padding: 10px;
 
padding-top: 40px !important;
 
border-style: solid;
 
border-width: thin;
 
border-right-width: medium !important;
 
background-color: #1e1e1e !important;
 
}
 
#toc-wrapper.ui-draggable.ui-resizable.sidebar-wrapper {
 
border-color: rgba(93,92,82,.25) !important;
 
}
 
#toc a,
 
#navigate_menu a,
 
.toc {
 
color: #f8f8f0 !important;
 
font-size: 16pt !important;
 
}
 
#toc li > span:hover {
 
background-color: rgba(93,92,82,.25) !important;
 
}
 
#toc a:hover,
 
#navigate_menu a:hover,
 
.toc {
 
color: #DAA520 !important;
 
font-size: 16pt !important;
 
}
 
#toc-wrapper .toc-item-num {
 
color: #388bfd !important;
 
font-size: 16pt !important;
 
}
 
*/
 
</syntaxhighlight>
 
 
 
<br />
 
 
====Configurations from the Juniper notebook====
 
 
<syntaxhighlight lang="python3">
 
from IPython.core.display import display, HTML;
 
 
display(HTML("<style>.container { width:98% !important;}</style>"<))
 
 
display(HTML('<style>.prompt.input_prompt{display:none !important;}</style>'))
 
display(HTML('<style>.prompt.input_prompt{visibility: visible !important;</style>'))
 
display(HTML('<style>.prompt.input_prompt{margin-left8kmclustering.ipynb 50px}</style>'))
 
display(HTML('<style>.prompt.input_prompt{visibility: visible !important; width: 0px !important; min-width: 0px !important}</style>')) 
 
 
display(HTML('<style>.input_area{margin-left: -50px;}</style>'))
 
display(HTML('<style>.input{margin-left: -20px;}</style>'))
 
 
display(HTML('<style>.output_area{margin-left: 55px}</style>'))
 
 
# display(HTML('<style>.cell{margin-bottom: -5px !important; margin-top: -5px !important;}</style>'))
 
# display(HTML('<style>.code_cell{margin-bottom: -5px !important; margin-top: -5px !important;}</style>'))
 
 
# display(HTML('<style>.output_wrapper{margin-bottom: 0px !important; margin-top: 0px !important;}</style>'))
 
</syntaxhighlight>
 
  
  

Revision as of 11:07, 28 February 2026


Anaconda

Anaconda is a free and open source distribution of the Python and R programming languages for data science and machine learning related applications.

En otras palabras, Anaconda puede ser visto como un paquete (a distribution) que incluye no solo Python (or R) but many libraries that are used in Data Science, as well as its own virtual environment system. It's an "all-in-one" install that is extremely popular in data science and Machine Learning.


Anaconda comes with a few IDE:

  • Jupyter Lab
  • Jupyter Notebook
  • Spyder
  • Qtconsole
  • and others



Jupyter

Jupyter comes with Anaconda. It is a development environment (IDE) where we can write codes; but it also allows us to display images, and write down markdown notes.



Share Jupyter Notebook online

  • GitHub:
https://docs.github.com/en/github/managing-files-in-a-repository/working-with-jupyter-notebook-files-on-github
Example: https://github.com/adeloaleman/AmazonLaptopsDashboard/blob/master/DataAnalysis/data_analysis2.ipynb


  • Nbviewer
https://nbviewer.jupyter.org/
Example: https://nbviewer.jupyter.org/github/bokeh/bokeh-notebooks/blob/main/tutorial/06%20-%20Linking%20and%20Interactions.ipynb



Online Jupyter

There are many sites that provides solutions to run your Jupyter Notebook in the cloud: https://www.dataschool.io/cloud-services-for-jupyter-notebook/

For example: https://colab.research.google.com



Some of the most popular Python Data Science Libraries

  • NumPy
  • SciPy
  • Pandas
  • Seaborn
  • SciKit'Learn
  • MatplotLib
  • Plotly
  • PySpartk



NumPy and Pandas


Data Visualization with Python


Natural Language Processing


Plotly Dash


Using SQL in Jupyter

Connecting to a database in Jupyter


https://pypi.org/project/ipython-sql/

https://stackoverflow.com/questions/454854/no-module-named-mysqldb

https://stackoverflow.com/questions/5178292/pip-install-mysql-python-fails-with-environmenterror-mysql-config-not-found

https://docs.kyso.io/guides/sql-interface-within-jupyterlab

https://www.datacamp.com/community/tutorials/sql-interface-within-jupyterlab

https://stackoverflow.com/questions/43641362/adding-syntax-highlighting-to-jupyter-notebook-cell-magic

https://www.sqlshack.com/learn-jupyter-notebooks-for-sql-server/


Verificar las fuentes above. Creo que lo único que tuve que hacer la última vez que lo instalé fue basado en las 3 primeras sources:

pip install ipython-sql

sudo apt install default-libmysqlclient-dev

pip install mysqlclient

sudo apt-get install python3-mysqldb


Luego adding SQL syntax highlighting to Jupyter as describe above in the corrrespoinding source.